ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR1314
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGCCTTGAATGTTAGGAGAA miRNA* CTTCAACATTAGAGGCCAATA mismatches: 2 bulges: 1 |
pre-miRNA
TTCATAAGGTTAAGTGCCAATTCCAATTCCAATTGATAACATGTTAGTTAGCTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATAATATTCTTATT
CTTAATCGGCCTTGAATGTTAGGAGAACGTTTTCCTCTACCTAAGCATGCTATCTCAAAGGAGTTTAAGGAGTGGTTGGCTGCGT
dot-bracket secondary structure
).......((.....(((((((((((((((....((((.((((((((.(((..(((((..((((((((((((.((((((.((..(((((((.....)))))
))..)).)))))).)))))).))))))..)))))..))).)))).)))).)))).....))))))...)))...)))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTCATAAGGTTAAGTGCCAATTCCAATTCCAATTGATAACATGTTAGTTAGCTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATAATATTCTTATT
CTTAATCGGCCTTGAATGTTAGGAGAACGTTTTCCTCTACCTAAGCATGCTATCTCAAAGGAGTTTAAGGAGTGGTTGGCTGCGT
dot-bracket secondary structure
).......((.....(((((((((((((((....((((.((((((((.(((..(((((..((((((((((((.((((((.((..(((((((.....)))))
))..)).)))))).)))))).))))))..)))))..))).)))).)))).)))).....))))))...)))...)))))).))..
SIMILARITIES| miRBase pta-MIR1314: 3.0E-86 PMRD pta-miR1314: 3.0E-86 microPC miR1314: 1.0E-32 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pta-MIR1314 from miRBase (MNEST039449), pta-miR1314 from PMRD , miR1314 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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