miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST002051
species: Pinus taeda
miRNA family: MIR1314
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCGGCCTTGAATGTTAGGAGAA

miRNA*
CTTCAACATTAGAGGCCAATA

mismatches: 2
bulges: 1

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pre-miRNA
TCATAAGGTTAAGTGCCAATTCCAATTCCAATTGATAACATGTTAGTTAGCTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATAATATTCTTATT
CTTAATCGGCCTTGAATGTTAGGAGAACGTTTTCCTCTACCTAAGCATGCTATCTCAAAGGAGTTTAAGGAGTGGTTGGCTGCGT


dot-bracket secondary structure
.......((.....(((((((((((((((....((((.((((((((.(((..(((((..((((((((((((.((((((.((..(((((((.....)))))
))..)).)))))).)))))).))))))..)))))..))).)))).)))).)))).....))))))...)))...)))))).))..



SIMILARITIES
miRBase pta-MIR1314: 3e-86

PMRD pta-miR1314: 3e-86

microPC miR1314: 1e-32
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: pta-MIR1314 from miRBase (MNEST039449)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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