ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR1314
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGCCTCGAATGTTAGGAGA miRNA* TTCAACATTAGAGGCCAATA mismatches: 2 bulges: 1 |
pre-miRNA
GCCCATTCCAAACGATAACATGTTAGTTAGCTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTCGAATGTT
AGGAGAATGTTTTCCTCTACCTAAGCATGCTATCTCAATGGAATT
dot-bracket secondary structure
....((((((...((((.((((((((.(((..(((((.(((((((((((((.((((((.((..(((((.........)))))..)).)))))).))))))
.))))))).)))))..))).)))).)))).))))....)))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCCATTCCAAACGATAACATGTTAGTTAGCTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTCGAATGTT
AGGAGAATGTTTTCCTCTACCTAAGCATGCTATCTCAATGGAATT
dot-bracket secondary structure
....((((((...((((.((((((((.(((..(((((.(((((((((((((.((((((.((..(((((.........)))))..)).)))))).))))))
.))))))).)))))..))).)))).)))).))))....)))))).
SIMILARITIES| miRBase pta-MIR1314: 4e-60 PMRD pta-miR1314: 4e-60 microPC miR1314: 1e-32 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1314 from microPC (MNEST045564) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
