ABOUT THIS RECORDspecies: Pinus taeda
miRNA family: MIR482
source: miRNEST
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCCCTACTCCTCCCATTCC miRNA* TGTGGAAGGATAGGGTAAGACT mismatches: 2 bulges: 2 |
pre-miRNA
GGTTGCGAGAAAGGGAGGTGATATGGTTAGAAGTCTTGAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGC
TCCAGTCTTCCCTACTCCTCCCATTCCTTTTGCCTTCACCACACTTCCCTTTCCAACGCAGCACA
dot-bracket secondary structure
.((((((.((((((((((((...((((..((((....((((.((((.(((((((((.((((((..((....((((((...............))))))..
.))))))))))))).)))).)))).))))....))))))))))))))))))))...))))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTTGCGAGAAAGGGAGGTGATATGGTTAGAAGTCTTGAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGC
TCCAGTCTTCCCTACTCCTCCCATTCCTTTTGCCTTCACCACACTTCCCTTTCCAACGCAGCACA
dot-bracket secondary structure
.((((((.((((((((((((...((((..((((....((((.((((.(((((((((.((((((..((....((((((...............))))))..
.))))))))))))).)))).)))).))))....))))))))))))))))))))...))))))...
SIMILARITIES| miRBase pta-MIR482a: 6e-47 PMRD pta-miR482a: 6e-47 microPC miR482: 3e-42 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: pta-MIR482a from miRBase (MNEST039429) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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