miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002054
species: Pinus taeda
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TCTTCCCTACTCCTCCCATTCC

miRNA*
TGTGGAAGGATAGGGTAAGACT

mismatches: 2
bulges: 2

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pre-miRNA
GGTTGCGAGAAAGGGAGGTGATATGGTTAGAAGTCTTGAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGC
TCCAGTCTTCCCTACTCCTCCCATTCCTTTTGCCTTCACCACACTTCCCTTTCCAACGCAGCACA


dot-bracket secondary structure
.((((((.((((((((((((...((((..((((....((((.((((.(((((((((.((((((..((....((((((...............))))))..
.))))))))))))).)))).)))).))))....))))))))))))))))))))...))))))...



SIMILARITIES
miRBase pta-MIR482a: 6e-47

PMRD pta-miR482a: 6e-47

microPC miR482: 3e-42
UniProt no hits

RFAM no hits
most similar mature miRNAs

Identical with: pta-MIR482a from miRBase (MNEST039429)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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