ABOUT THIS RECORDspecies: Pisum sativum
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Pisum sativum Pisum Fabeae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTACGGGAAGCCAGGCATA mismatches: 1 bulges: 0 |
pre-miRNA
CATGAGTATGTGCCTGGCTCCCTGTATGCCATATACGAAGCTTATTGAAATATCAATAACCTTTGTGGATGGCGTACGGGAAGCCAGGCATATTCCATT
dot-bracket secondary structure
.(((...((((((((((((.((((((((((((.(((((((.(((((((....))))))).))))))).)))))))))))).))))))))))))..))).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CATGAGTATGTGCCTGGCTCCCTGTATGCCATATACGAAGCTTATTGAAATATCAATAACCTTTGTGGATGGCGTACGGGAAGCCAGGCATATTCCATT
dot-bracket secondary structure
.(((...((((((((((((.((((((((((((.(((((((.(((((((....))))))).))))))).)))))))))))).))))))))))))..))).
SIMILARITIES| miRBase mtr-MIR160e: 2e-27 PMRD mtr-miR160e: 2e-27 microPC miR160: 0.00000008 | UniProt no hits RFAM mir-160: 3e-23 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
