ABOUT THIS RECORDspecies: Pisum sativum
miRNA family: MIR160
source: miRNEST
Taxonomy by NCBI:
Pisum sativum Pisum Fabeae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTACGGGAAGCCAGGCATA mismatches: 1 bulges: 0 |
pre-miRNA
TCATGAGTATGTGCCTGGCTCCCTGTATGCCATATACGAAGCTTATTGAAATATCAATAACCTTTGTGGATGGCGTACGGGAAGCCAGGCATATTCCATT
dot-bracket secondary structure
).(((...((((((((((((.((((((((((((.(((((((.(((((((....))))))).))))))).)))))))))))).))))))))))))..))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCATGAGTATGTGCCTGGCTCCCTGTATGCCATATACGAAGCTTATTGAAATATCAATAACCTTTGTGGATGGCGTACGGGAAGCCAGGCATATTCCATT
dot-bracket secondary structure
).(((...((((((((((((.((((((((((((.(((((((.(((((((....))))))).))))))).)))))))))))).))))))))))))..))).
SIMILARITIES| miRBase mtr-MIR160e: 2.0E-27 PMRD mtr-miR160e: 2.0E-27 microPC miR160: 8.0E-8 | UniProt no hits RFAM 0mir-160: 3.0E-23 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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