ABOUT THIS RECORDspecies: Populus euphratica
miRNA family: MIR774
source: miRNEST
Taxonomy by NCBI:
Populus euphratica Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGAGAAGAAGATTTGGATGAT miRNA* TATGAGGAGCTTCTTGGCCGA mismatches: 5 bulges: 0 |
pre-miRNA
CTGGGGATGCAGGAGAAGAAGATTTGGATGATCATGCCAGGGAAGATGAAAATGGGGAGGGTGCTGACCTGCAGCAGCCACGATTCCCTTGGGATGGGAC
TGACCGTGATTATGATTATGAGGAGCTTCTTGGCCGAGTTTTCAA
dot-bracket secondary structure
.(((((((...((..((((((.(((..(((((((((((((((((........((....((.(((((.....))))).)).)).))))).))).((((...
...))))...)))))))))..))).))))))..))..))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGGGGATGCAGGAGAAGAAGATTTGGATGATCATGCCAGGGAAGATGAAAATGGGGAGGGTGCTGACCTGCAGCAGCCACGATTCCCTTGGGATGGGAC
TGACCGTGATTATGATTATGAGGAGCTTCTTGGCCGAGTTTTCAA
dot-bracket secondary structure
.(((((((...((..((((((.(((..(((((((((((((((((........((....((.(((((.....))))).)).)).))))).))).((((...
...))))...)))))))))..))).))))))..))..))))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P55871|IF2B_MALDO: 0.0000000008 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
