ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIR168
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGCTTGGTGCAGGTCGGGAA miRNA* CCCGCCTTGCATCAACTGAAT mismatches: 3 bulges: 0 |
pre-miRNA
GCCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAG
AAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGG
dot-bracket secondary structure
)...(((((((((.(((((.((((((((((.(((((.((((((((....((((.(((((..((((((((......))))))))..))))).((.....)))
))).)))))))).))))).)))))))))).))))).)))))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCGGCGGTCTCTAATTCGCTTGGTGCAGGTCGGGAACTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAG
AAAGAGAATTGGATCCCGCCTTGCATCAACTGAATCGGAGACCGCGG
dot-bracket secondary structure
)...(((((((((.(((((.((((((((((.(((((.((((((((....((((.(((((..((((((((......))))))))..))))).((.....)))
))).)))))))).))))).)))))))))).))))).)))))))))..
SIMILARITIES| miRBase ptc-MIR168b: 2.0E-68 PMRD ptc-miR168b: 2.0E-68 microPC miR168: 1.0E-62 | UniProt no hits RFAM 8MIR168: 8.0E-74 | most similar mature miRNAs |
Identical with: miR168 from microPC (MNEST045088), pts-miR168a from PMRD , ptr-miR168 from PMRD , miR168 from microPC |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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