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Species belonging to selected taxon:
Populus deltoides
,
Populus euphratica
,
Populus nigra
,
Populus tremula
,
Populus tremula x Populus alba
,
Populus tremula x Populus tremuloides
,
Populus tremuloides
,
Populus trichocarpa x Populus nigra
,
Populus x canadensis
,
Populus trichocarpa
,
Populus trichocarpa x Populus deltoides
ABOUT THIS RECORD
ID:
MNEST002191
species:
Populus tremula x Populus tremuloides
miRNA family:
MIR168
source:
miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides
Populus
Saliceae
Salicaceae
Malpighiales
fabids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAA
miRNA*
CCCGCCTTGCATCAACTGAAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
CCGGCGGTCTCTAAT
TCGCTTGGTGCAGGTCGGGAA
CTGATTCTGCGATTTCATTGCCAGATGGCTAAACACGATTGGCTGTGAGGCAAATTATAAAAAG
AAAGAGAATTGGAT
CCCGCCTTGCATCAACTGAAT
CGGAGACCGCGG
dot-bracket secondary structure
...(((((((((.((
(((.((((((((((.(((((.
((((((((....((((.(((((..((((((((......))))))))..))))).((.....)))
))).)))))))).)
)))).)))))))))).)))))
.)))))))))..
SIMILARITIES
miRBase
ptc-MIR168b
:
2e-68
PMRD
ptc-miR168b
:
2e-68
microPC
miR168
:
1e-62
UniProt
no hits
RFAM
MIR168: 8e-74
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record