ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIRf459
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTGTATTCTTCCACAGCTT miRNA* ACTGGGGGAAGATACAAACAG mismatches: 3 bulges: 2 |
pre-miRNA
GGTGTGTTTGTATGTGACCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCAT
ATGACATTGTATTCATTTTTGCTGCGGATCAATAAAACTGGGGGAAGATACAAACAGGAGCAAAGAAAGTTGCTA
dot-bracket secondary structure
((((..(((...(((...(((.(((((((.(((((.(((.(((.((((.(((((.....((((...(((.((((((((((((((.....).))))))...
..)))))))....))).)))).))))).)))).))).)))..)))))))))))).))).)))..)))...)))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
GGTGTGTTTGTATGTGACCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCAT
ATGACATTGTATTCATTTTTGCTGCGGATCAATAAAACTGGGGGAAGATACAAACAGGAGCAAAGAAAGTTGCTA
dot-bracket secondary structure
((((..(((...(((...(((.(((((((.(((((.(((.(((.((((.(((((.....((((...(((.((((((((((((((.....).))))))...
..)))))))....))).)))).))))).)))).))).)))..)))))))))))).))).)))..)))...)))).
SIMILARITIES| miRBase ptc-MIR396b: 3e-61 PMRD ptc-miR396b: 3e-61 microPC miR396: 2e-50 | UniProt no hits RFAM MIR396: 8e-62 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
