ABOUT THIS RECORDspecies: Populus trichocarpa x Populus nigra
miRNA family: MIRf445
source: miRNEST
Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCGATGCAGCATCATCAAGAT miRNA* CTTGATGATGCTCCACCCGCA mismatches: 4 bulges: 0 |
pre-miRNA
GTCCTTTTGTGTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAGAGATTTAA
CTCTAACATCTCCGGCCGTGCATTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAACGATTGTCAATATTTCCATG
dot-bracket secondary structure
).......((((((.(((((((((..((((...((.(((((((((((((((((((((.(((((....))))).)).)))..(((.......((((......
))))....))).....(((((....))))).)))))))))))))))).))...))))..))))))))))))))).......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTCCTTTTGTGTTGTATAGTCGTTTATTGCCGATGCAGCATCATCAAGATTCTCACTTCCAAAGAACTTTGGCAGATGAACAGAAACAAAGAGAGATTTAA
CTCTAACATCTCCGGCCGTGCATTTGCATGTGAATCTTGATGATGCTCCACCCGCAAACAACGATTGTCAATATTTCCATG
dot-bracket secondary structure
).......((((((.(((((((((..((((...((.(((((((((((((((((((((.(((((....))))).)).)))..(((.......((((......
))))....))).....(((((....))))).)))))))))))))))).))...))))..))))))))))))))).......
SIMILARITIES| miRBase ptc-MIR172b: 5.0E-66 PMRD ptc-miRf10081-akr: 3.0E-70 microPC miR172: 2.0E-6 | UniProt no hits RFAM 2mir-172: 2.0E-65 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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