miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002228
species: Populus trichocarpa x Populus nigra
miRNA family: MIR838
source: miRNEST

Taxonomy by NCBI:
Populus trichocarpa x Populus nigra Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTCTTCTACTTCTTCCATT

miRNA*
 GGAGAGGGAGAGGGAGAGA

mismatches: 1
bulges: 2
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pre-miRNA
 CAGCCTCAAGCTTTTCTTCTACTTCTTCCATTTCTTTTTTCTGTGATGATTTTGAATCCGATCTCCAGGCAATGTAAAGTAGCCGCAGGCCAAAAAATGC
ATAAAGAACGGTGGCTGCACTATTTGTATGCTTCCTTGAAATTAAATTTGGCACGATTCTACCAAGTCCAGTAGAAAGTACCTAAATGACATGCACAACA
GCTTTAAGCTTCACCAACATTGAGAATAAGAAAAGTTCAGTGTAGTTGCTGGCTGGACCATTCCATTCAATGCCTTGCAGTGTCAGAAGAAAGAAAGGAG
AGGGAGAGGGAGAGAGAGAACAA

dot-bracket secondary structure
....(((...((((((((((.(((((((..(((((((((((((...((...((((((..((..(((.(((.((.....)).)))(((.((((((....((
(((..(((.((((....)))).))).)))))...............))))))....((((((........)))))).((.........)).))).....(
(((...(((...((..((((((((...........)))))))).)).))))))))))....)).)))))).......))....)))))))))))))))))
))).)))))))))).))).....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt sp|Q6ZIB9|GDT14_ORYSJ: 6e-16

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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