ABOUT THIS RECORDspecies: Populus x canadensis
miRNA family: MIRf874
source: miRNEST
Taxonomy by NCBI:
Populus x canadensis Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGTCAATGTTCCAGTGATG miRNA* TCACTTGAATGTTGACCGAAT mismatches: 1 bulges: 0 |
pre-miRNA
TTTTTGAGTTTATCACTTGAATGTTGACCGAATATGGATGAAAAGTTGTTTTCCGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGAGCATAA
AT
dot-bracket secondary structure
..((((.((((((((((.(((((((((((((((.((((.((((.................)))).)))).))))))))))))))).)))))))))).)))
).
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTTTTGAGTTTATCACTTGAATGTTGACCGAATATGGATGAAAAGTTGTTTTCCGTTTCCTTTCCTCCACATTCGGTCAATGTTCCAGTGATGAGCATAA
AT
dot-bracket secondary structure
..((((.((((((((((.(((((((((((((((.((((.((((.................)))).)))).))))))))))))))).)))))))))).)))
).
SIMILARITIES| miRBase ptc-MIR1444a: 5e-43 PMRD ptc-miRf10525-akr: 2e-45 microPC miR1444: 3e-32 | UniProt no hits RFAM MIR1444: 1e-40 | most similar mature miRNAs |
Identical with: miR1444 from microPC (MNEST045069) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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