ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAGCCAAGAATGACTTGCTG miRNA* GCAAGTTGTTCTTGGTTCTGT mismatches: 1 bulges: 0 |
pre-miRNA
GAATTAATGCAGTTATGAAAAGGGTCTTGCATGAAAGGGTAGAGAGTGGAGCTGAGCCAAGAATGACTTGCTGCAATTAATCGAAGGTGAAGTAACAATTT
GTATATCGTTGGGCATACATACGCAGCAAGTTGTTCTTGGTTCTGTTTGGTTCTCTATGTTCTCATGTCAGACTCTTGGATGTGAGACTCTTGG
dot-bracket secondary structure
).........((((.((..((((((((.((((((.((.(((((((((.((((.(((((((((((((((((((((......((((....((.(((.......
.))).)).))))..........))))))))))))))))))))).)))).))))))))).)).)))))).)))))))).....)).)))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAATTAATGCAGTTATGAAAAGGGTCTTGCATGAAAGGGTAGAGAGTGGAGCTGAGCCAAGAATGACTTGCTGCAATTAATCGAAGGTGAAGTAACAATTT
GTATATCGTTGGGCATACATACGCAGCAAGTTGTTCTTGGTTCTGTTTGGTTCTCTATGTTCTCATGTCAGACTCTTGGATGTGAGACTCTTGG
dot-bracket secondary structure
).........((((.((..((((((((.((((((.((.(((((((((.((((.(((((((((((((((((((((......((((....((.(((.......
.))).)).))))..........))))))))))))))))))))).)))).))))))))).)).)))))).)))))))).....)).)))).....
SIMILARITIES| miRBase aly-MIR169g: 1.0E-5 PMRD psl-miR169: 7.0E-56 microPC no hits | UniProt no hits RFAM 2MIR169_2: 1.0E-54 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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