ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAAATACTCCCTCCGTCCGGA miRNA* TGGACGGAGGTAGTATATGTT mismatches: 4 bulges: 0 |
pre-miRNA
CAGTCGCCAATAAAATACTCCCTCCGTCCGGAAATATTTGTCTAAGAGATAGATGTATCTAGACGTATTTTAGTTCTAGATACATCCTTTTTATCCATTT
CGAAGACAAGTATTTCTGGACGGAGGTAGTATATGTTTGAAG
dot-bracket secondary structure
.......(((....(((((.(((((((((((((((((((((((..(((((.((((((((((((...((....))))))))))))))..........))))
)..))))))))))))))))))))))).)))))....)))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CAGTCGCCAATAAAATACTCCCTCCGTCCGGAAATATTTGTCTAAGAGATAGATGTATCTAGACGTATTTTAGTTCTAGATACATCCTTTTTATCCATTT
CGAAGACAAGTATTTCTGGACGGAGGTAGTATATGTTTGAAG
dot-bracket secondary structure
.......(((....(((((.(((((((((((((((((((((((..(((((.((((((((((((...((....))))))))))))))..........))))
)..))))))))))))))))))))))).)))))....)))...
SIMILARITIES| miRBase tae-MIR1135: 8e-21 PMRD ata-miR1122: 2e-27 microPC miR1128: 1e-16 | UniProt no hits RFAM MIR1122: 2e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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