miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse



ABOUT THIS RECORD

ID: MNEST002279
species: Pseudoroegneria spicata
miRNA family: MIR529
source: miRNEST

Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATCTCTCCTCTCTCTTCTTCT

miRNA*
 AACACAGAGAAGGAGAAATTA

mismatches: 4
bulges: 2
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pre-miRNA
 ACAATACATTCGAACACAGAGAAGGAGAAATTACAAAATACCAAACTCAATACTACGAATAATCTGGATCTTTTTGTACGGCCGAGTACTACACCACGCA
AAGAGCAGCCAAAGATGCCCCCCATAGTTCTCAACGCTATCCAGATGTATAACTGTTAATATCTGTTATCCGGACAAGCTGTCCTCTGGGGAAAGGTTGA
GTTAATGCTTCAAGGGATAAGCGCTTCCATCGAATTTTGCAACAGCCTCATTCGGCTTGGGCGTCTCCAATCTCTCCTCTCTCTTCTTCTTTTCCCTCT

dot-bracket secondary structure
...........(((...(((((((((((.(((((((((..(((.....................)))....))))))..(((...((.((..........
.)).)).)))..(((((((((((..(((.((((((.((.((((((.(.(((((...........))))).)(((((...)))))))))))...)))))))
).....)))....)))....(((.(((....)))...)))...((((......)))).))))))))..))).)))))).)))))..)))..........


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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