ABOUT THIS RECORDspecies: Pseudoroegneria spicata
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Pseudoroegneria spicata Pseudoroegneria Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCCTGATCATCATCTTCA miRNA* AAGGTGTAGGTTTGGCTGGGC mismatches: 4 bulges: 0 |
pre-miRNA
CATGTCCTGATGAAGGTGTAGGTTTGGCTGGGCTGTTATCAACAGGTTCATCTTTCGGTTGATCCGTCTGCTTTGGAGCAAGCACTGGAGATGACTCATC
ATCCTGATCATCATCTTCATCATCATCA
dot-bracket secondary structure
.(((...(((((((((((..((((.((.(((...((((((..((((((..(((...(((.((....)).)))..)))...))).)))..))))))...))
).)).))))..))))))))))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
CATGTCCTGATGAAGGTGTAGGTTTGGCTGGGCTGTTATCAACAGGTTCATCTTTCGGTTGATCCGTCTGCTTTGGAGCAAGCACTGGAGATGACTCATC
ATCCTGATCATCATCTTCATCATCATCA
dot-bracket secondary structure
.(((...(((((((((((..((((.((.(((...((((((..((((((..(((...(((.((....)).)))..)))...))).)))..))))))...))
).)).))))..))))))))))).)))..
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
