ABOUT THIS RECORDspecies: Quercus petraea
miRNA family: MIR403
source: miRNEST
Taxonomy by NCBI:
Quercus petraea Quercus Fagaceae Fagales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTAGATTCACGCACAAACTCT miRNA* AGTTTGTGCGTGAATCCGACC mismatches: 3 bulges: 0 |
pre-miRNA
AAAGAGAGATGGGACCTATCTCAAGTTTGTGCGTGAATCCGACCCCATCACATTTGTTCATTTTTAATCATGCCATACCATCCGATGGTGTTAGATTCACG
CACAAACTCTTGATTTGTCTCCTCTGCAA
dot-bracket secondary structure
).....(((.(((((..(((...((((((((((((((((.(((.(((((..................................))))).))).))))))))
))))))))...)))..))))).)))....
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAAGAGAGATGGGACCTATCTCAAGTTTGTGCGTGAATCCGACCCCATCACATTTGTTCATTTTTAATCATGCCATACCATCCGATGGTGTTAGATTCACG
CACAAACTCTTGATTTGTCTCCTCTGCAA
dot-bracket secondary structure
).....(((.(((((..(((...((((((((((((((((.(((.(((((..................................))))).))).))))))))
))))))))...)))..))))).)))....
SIMILARITIES| miRBase tcc-MIR403b: 1.0E-13 PMRD ptc-miR403b: 1.0E-7 microPC miR403: 6.0E-6 | UniProt no hits RFAM 3MIR403: 8.0E-9 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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