ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR2673
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTCTTCCTCTTCCTCTTCAT miRNA* AGAGAGAAAGAGAGAGAGAGA mismatches: 5 bulges: 0 |
pre-miRNA
ACCAAACATTGCCTCTTCCTCTTCCTCTTCATCCTCCTCCGGTTTTTAACTTTCCAATGAACCAGAGGGAGTATCATATGAACGGATTCTTTGAAGCACC
GCCACCTGGAGCTTCTGCTTACAACAACATTACAAACCAGGCAAGGTTTGGTTCTTCTAACAGCAGCTCCGTACCTTGCTCTATCTCCATGTTAGACGAA
TACTTGTTTTCCCAGATGCAGCAACCGAACTGAGAGAGAGAAAGAGAGAGAGAGATTTTGATG
dot-bracket secondary structure
..((((.(((..(((((.(((((.(((((..((.(((((.(((((.............))))).)))))(((.((...((..(((.(((...)))...))
).))..(((((((.(((.(((.((.(((....((((((......))))))))).)).)))))).)))))))....(((((.(((((.......((((((.
...))))))....))))).)))))..)))))))..))))).))))).))))).)))))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACCAAACATTGCCTCTTCCTCTTCCTCTTCATCCTCCTCCGGTTTTTAACTTTCCAATGAACCAGAGGGAGTATCATATGAACGGATTCTTTGAAGCACC
GCCACCTGGAGCTTCTGCTTACAACAACATTACAAACCAGGCAAGGTTTGGTTCTTCTAACAGCAGCTCCGTACCTTGCTCTATCTCCATGTTAGACGAA
TACTTGTTTTCCCAGATGCAGCAACCGAACTGAGAGAGAGAAAGAGAGAGAGAGATTTTGATG
dot-bracket secondary structure
..((((.(((..(((((.(((((.(((((..((.(((((.(((((.............))))).)))))(((.((...((..(((.(((...)))...))
).))..(((((((.(((.(((.((.(((....((((((......))))))))).)).)))))).)))))))....(((((.(((((.......((((((.
...))))))....))))).)))))..)))))))..))))).))))).))))).)))))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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