ABOUT THIS RECORDspecies: Raphanus raphanistrum subsp. maritimus
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Raphanus raphanistrum subsp. maritimus Raphanus raphanistrum Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATCATCA miRNA* ATTCTGGTGAGGATGAGATT mismatches: 4 bulges: 1 |
pre-miRNA
CAGATTCTGGTGAGGATGAGATTTGGGAAGATTGTGGAAGGCTTGAAGTCCAAGATAAAGGCAAGTCTAAGGATGCGGAAGAGATCCTCATTATCATCAT
CGTCATCGTCGTCATCATCATCATCATCATCA
dot-bracket secondary structure
..(((..((((((.((((((((.(((((.(((.((((.(((((((................)))))))...((((.(((.....))).)))).)))).))
).)).)))..))).))))).))))))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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CAGATTCTGGTGAGGATGAGATTTGGGAAGATTGTGGAAGGCTTGAAGTCCAAGATAAAGGCAAGTCTAAGGATGCGGAAGAGATCCTCATTATCATCAT
CGTCATCGTCGTCATCATCATCATCATCATCA
dot-bracket secondary structure
..(((..((((((.((((((((.(((((.(((.((((.(((((((................)))))))...((((.(((.....))).)))).)))).))
).)).)))..))).))))).))))))..))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.0000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
