ABOUT THIS RECORDspecies: Raphanus sativus var. oleiformis
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGAGAGCACA miRNA* TAGCTCTCTGGTTTAGTGTCCAT mismatches: 4 bulges: 2 |
pre-miRNA
TGGTGTGGGTTTGACAGAAGAGAGAGAGCACAGTTTGAGTCGCTGCCAATCCCCTTGTAGCTCTCTGGTTTAGTGTCCATAACCTCTG
dot-bracket secondary structure
......(((((.((((.(((..(((((((((((.(((.((....))))).....)))).)))))))..)))..))))...)))))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
TGGTGTGGGTTTGACAGAAGAGAGAGAGCACAGTTTGAGTCGCTGCCAATCCCCTTGTAGCTCTCTGGTTTAGTGTCCATAACCTCTG
dot-bracket secondary structure
......(((((.((((.(((..(((((((((((.(((.((....))))).....)))).)))))))..)))..))))...)))))...
SIMILARITIES| miRBase far-MIR529: 0.000000004 PMRD ath-miR156q: 3e-16 microPC miR157: 0.00002 | UniProt sp|Q700W2|SPL9_ARATH: 0.000002 RFAM mir-156: 0.0003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
