ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR2504
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGACCAAGTTTATAAAAAAT miRNA* TTTCTATAAACTTGATCAAAC mismatches: 4 bulges: 0 |
pre-miRNA
AATTAAGACAAACTTGTTTATCTGACCAAGTTTATAAAAAATATATACTAATATCTACACTATCAAATAAATAAATGGACTGGTTAACTATAATTCACAG
TAATAAATCTAATGTGATGTTGAAGATATTTGTATATTTTTTCTATAAACTTGATCAAACACTTAGTACAAAGCTAAA
dot-bracket secondary structure
.....(((((....)))))...(((.((((((((((.((((.((((((.(((((((.((.(((((.............((((...............)))
).............))))).)).))))))).)))))).)))).)))))))))).))).....(((((.....))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AATTAAGACAAACTTGTTTATCTGACCAAGTTTATAAAAAATATATACTAATATCTACACTATCAAATAAATAAATGGACTGGTTAACTATAATTCACAG
TAATAAATCTAATGTGATGTTGAAGATATTTGTATATTTTTTCTATAAACTTGATCAAACACTTAGTACAAAGCTAAA
dot-bracket secondary structure
.....(((((....)))))...(((.((((((((((.((((.((((((.(((((((.((.(((((.............((((...............)))
).............))))).)).))))))).)))))).)))).)))))))))).))).....(((((.....))))).
SIMILARITIES| miRBase ssp-MIR437b: 0.0000001 PMRD zma-miR437f: 0.0000006 microPC miR437: 0.000009 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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