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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST002492
species:
Saccharum officinarum
miRNA family:
MIR2504
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTGACCAAGTTTATAAAAAAT
miRNA*
TTTCTATAAACTTGATCAAAC
mismatches:
4
bulges:
0
View larger
pre-miRNA
AATTAAGACAAACTTGTTTAT
CTGACCAAGTTTATAAAAAAT
ATATACTAATATCTACACTATCAAATAAATAAATGGACTGGTTAACTATAATTCACAG
TAATAAATCTAATGTGATGTTGAAGATATTTGTATATTT
TTTCTATAAACTTGATCAAAC
ACTTAGTACAAAGCTAAA
dot-bracket secondary structure
.....(((((....)))))..
.(((.((((((((((.((((.
((((((.(((((((.((.(((((.............((((...............)))
).............))))).)).))))))).)))))).)
))).)))))))))).)))...
..(((((.....))))).
SIMILARITIES
miRBase
ssp-MIR437b
:
0.0000001
PMRD
zma-miR437f
:
0.0000006
microPC
miR437
:
0.000009
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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