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ABOUT THIS RECORD

ID: MNEST002494
species: Saccharum officinarum
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AACGGGACGGAGGGAGTACTT

miRNA*
 TTACTCCCTCCGTCCCAATGA

mismatches: 5
bulges: 0
View larger
pre-miRNA
 ATGCATTACATTCTTACTCCCTCCGTCCCAATGAATATGCAATTCTCACATCCCGAGAAGTCAGCCATCGCAAATTTTGATTAAAATTACATAAAAAAAT
ACTAACTCTTATGAGACAAAATAAGTACCGTTAGATTGGTTATGAAATATATTTTCATAATAAATTTATTTCGAGACATAAATGCTGATACTTTTTGCTA
TAAATTTGGTCAAAGTTGACACAGTTTGAACGGCACGTTTCCCATAGTTGCATAATCAACGGGACGGAGGGAGTACTTTTTTGTTTAC

dot-bracket secondary structure
..............(((((((((((((((..(((.((((((((((((.......)))).(((.((....)).(((((((((((((.((((((((......
........)))))((.(((((..((((...(((((((.(((.(((((((.((((.......)))).))))))).)))...))).))))))))))))))).
))).))))))))))))))))...((..(((((...)))))...)).)))))))).)))..))))))))))))))).............


SIMILARITIES
miRBase ssp-MIR1128: 0.00002

PMRD sbi-miR437l: 0.0002

microPC miR1436: 0.0002		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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