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Species belonging to selected taxon:
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Zea mays
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST002494
species:
Saccharum officinarum
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AACGGGACGGAGGGAGTACTT
miRNA*
TTACTCCCTCCGTCCCAATGA
mismatches:
5
bulges:
0
View larger
pre-miRNA
ATGCATTACATTC
TTACTCCCTCCGTCCCAATGA
ATATGCAATTCTCACATCCCGAGAAGTCAGCCATCGCAAATTTTGATTAAAATTACATAAAAAAAT
ACTAACTCTTATGAGACAAAATAAGTACCGTTAGATTGGTTATGAAATATATTTTCATAATAAATTTATTTCGAGACATAAATGCTGATACTTTTTGCTA
TAAATTTGGTCAAAGTTGACACAGTTTGAACGGCACGTTTCCCATAGTTGCATAATC
AACGGGACGGAGGGAGTACTT
TTTTGTTTAC
dot-bracket secondary structure
.............
.(((((((((((((((..(((
.((((((((((((.......)))).(((.((....)).(((((((((((((.((((((((......
........)))))((.(((((..((((...(((((((.(((.(((((((.((((.......)))).))))))).)))...))).))))))))))))))).
))).))))))))))))))))...((..(((((...)))))...)).)))))))).))
)..)))))))))))))))...
..........
SIMILARITIES
miRBase
ssp-MIR1128
:
0.00002
PMRD
sbi-miR437l
:
0.0002
microPC
miR1436
:
0.0002
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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