ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGGGAGCTCCT miRNA* GAGCTCCCTTCGATCCAATCC mismatches: 2 bulges: 0 |
pre-miRNA
GAAGAAGATGGCGAAGAAAAGTGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATGCCTCTCTGG
TGCAGCAATGACTAATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGCTTGGATTGAAGGGAGCT
CCTCTCTCTTTCCTCTCTCTCTTTCTCCT
dot-bracket secondary structure
((.(((((.((.((.((((...((..((.((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....((
(((((...(((.......))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)))))))))))))))))
).))))..)))).)).)).))))).))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAGAAGATGGCGAAGAAAAGTGATCGAAGAGCTCCCTTCGATCCAATCCAGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATGCCTCTCTGG
TGCAGCAATGACTAATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTGCTTGGATTGAAGGGAGCT
CCTCTCTCTTTCCTCTCTCTCTTTCTCCT
dot-bracket secondary structure
((.(((((.((.((.((((...((..((.((((((((((((((((((..((.(((((((((((((.((((.((.((.((((.(((((.((((((....((
(((((...(((.......))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).)).)))))))))))))))))
).))))..)))).)).)).))))).))..
SIMILARITIES| miRBase sof-MIR159c: 4e-110 PMRD sof-miR159c: 4e-110 microPC miR319: 6e-94 | UniProt no hits RFAM MIR159: 3e-90 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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