miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Agrostis stolonifera
,
Oryza sativa
,
Avena barbata
,
Avena sativa
,
Curcuma longa
,
Cynodon dactylon
,
Elaeis guineensis
,
Eragrostis curvula
,
Festuca arundinacea
,
Festuca pratensis
,
Hordeum vulgare
,
Hordeum vulgare subsp. spontaneum
,
Leymus cinereus x Leymus triticoides
,
Lolium perenne
,
Musa ABB Group
,
Panicum virgatum
,
Pseudoroegneria spicata
,
Saccharum hybrid cultivar CoS 767
,
Saccharum hybrid cultivar SP70-1143
,
Saccharum officinarum
,
Sorghum propinquum
,
Triticum monococcum
,
Triticum turgidum subsp. durum
,
Zingiber officinale
,
Cenchrus ciliaris
,
Brachypodium distachyon
,
Zea mays
,
Triticum aestivum
,
Sorghum bicolor
ABOUT THIS RECORD
ID:
MNEST002508
species:
Saccharum officinarum
miRNA family:
MIR159
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTGGATTGAAGGGAGCTCCT
miRNA*
GAGCTCCCTTCGATCCAATCC
mismatches:
2
bulges:
0
View larger
pre-miRNA
GAAGAAGATGGCGAAGAAAAGTGATCGAA
GAGCTCCCTTCGATCCAATCC
AGGAGGGGAAGTGGTCGGTTGCAGCTGCCGGTTCATGGATGCCTCTCTGG
TGCAGCAATGACTAATGCTCACCTGCACTTGCATGGGTGTGCATGACCCGGGAGATGAACCCACCATCATCTTTCCCTCGTG
CTTGGATTGAAGGGAGCT
CCT
CTCTCTTTCCTCTCTCTCTTTCTCCT
dot-bracket secondary structure
((.(((((.((.((.((((...((..((.
((((((((((((((((((..(
(.(((((((((((((.((((.((.((.((((.(((((.((((((....((
(((((...(((.......))).))))))).....)))))).))))).)))).)).)))))).))))....))))))))).))
.)))))))))))))))))
).)
)))..)))).)).)).))))).))..
SIMILARITIES
miRBase
sof-MIR159c
:
4e-110
PMRD
sof-miR159c
:
4e-110
microPC
miR319
:
6e-94
UniProt
no hits
RFAM
MIR159: 3e-90
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record