ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: miR167g
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GGTCATGCTGTAGTTTCATCT miRNA* GTGAAGCTGCCAGCATGATCTG mismatches: 1 bulges: 1 |
pre-miRNA
AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGG
ATCCATGAATCCAGGATGAGGGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACAT
dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).((....(((((..(((((((((...((((..((
((......))))..)))).)))))))))....)))))......)).))))))))))))))))))))))))).))).))))..))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGG
ATCCATGAATCCAGGATGAGGGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACAT
dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).((....(((((..(((((((((...((((..((
((......))))..)))).)))))))))....)))))......)).))))))))))))))))))))))))).))).))))..))))..
SIMILARITIES| miRBase sof-MIR167b: 3e-104 PMRD sof-miR167b: 3e-104 microPC miR167: 1e-78 | UniProt no hits RFAM MIR167_1: 2e-32 | most similar mature miRNAs |
Identical with: sof-miR167b from PMRD (MNEST054635) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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