miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002533
species: Saccharum officinarum
miRNA family: miR167g
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGTCATGCTGTAGTTTCATCT

miRNA*
 GTGAAGCTGCCAGCATGATCTG

mismatches: 1
bulges: 1
View larger
pre-miRNA
 AGTGGTGCACCACAAGTTGGTGAAGCTGCCAGCATGATCTGATGGTGGTATATATGAATATATGATGTCTTTACCTCTGATCTCTCCCTGACTGTCACGG
ATCCATGAATCCAGGATGAGGGGAGGGAAGAAAGAGGGATAATGAGCATCAGGTCATGCTGTAGTTTCATCTGCTGGTGGGAGCACAT

dot-bracket secondary structure
....((((.((((.(((.(((((((((((.((((((((((((((((.((((((....)))))).)).((....(((((..(((((((((...((((..((
((......))))..)))).)))))))))....)))))......)).))))))))))))))))))))))))).))).))))..))))..


SIMILARITIES
miRBase sof-MIR167b: 3e-104

PMRD sof-miR167b: 3e-104

microPC miR167: 1e-78		UniProt no hits

RFAM MIR167_1: 2e-32		most similar mature miRNAs

Identical with: sof-miR167b from PMRD (MNEST054635)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;