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ABOUT THIS RECORD

ID: MNEST002563
species: Saccharum officinarum
miRNA family: MIR159
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTTGGATTGAAGGGAGCTCTG

miRNA*
GAGCTCCTATCATTCCAATGA

mismatches: 3
bulges: 0

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pre-miRNA
TTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTTGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTATGTGTG
TATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCATGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGTCCCCTT
GCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCC


dot-bracket secondary structure
..((.(((((((((((.(((.(((((.((..(((((...(((.(((.(((...(((.((((.(((((....((((...(((((((((..((((((....)
))))).(((((....)))))((((((.((((........))))..)).)))))))))))))...))))....))))).)))).))).)))....))).))
).)))))..)).))))).))).))))))))))).)).



SIMILARITIES
miRBase ssp-MIR159a: 2e-133

PMRD sof-miR159a: 2e-133

microPC miR319: 2e-23
UniProt no hits

RFAM MIR159: 8e-69
most similar mature miRNAs

Identical with: ssp-MIR159a from miRBase (MNEST042468)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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