ABOUT THIS RECORDspecies: Saccharum officinarum
miRNA family: MIR159
source: miRNEST
Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCTG miRNA* GAGCTCCTATCATTCCAATGA mismatches: 3 bulges: 0 |
pre-miRNA
TTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTTGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTATGTGTG
TATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCATGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGTCCCCTT
GCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCC
dot-bracket secondary structure
..((.(((((((((((.(((.(((((.((..(((((...(((.(((.(((...(((.((((.(((((....((((...(((((((((..((((((....)
))))).(((((....)))))((((((.((((........))))..)).)))))))))))))...))))....))))).)))).))).)))....))).))
).)))))..)).))))).))).))))))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTGAAGCGGAGCTCCTATCATTCCAATGAAGGGCCGTTCTGAAGGGTTGTTCCGCTGCTCGTTCATGGTTCCCACTATCCTATCTCATCATGTATGTGTG
TATGTATTTTCGAGAGGGAGGAGAGGAGCTAGACTCTCATGGTGGTCGTCTTTGAGATAGGCTTGTGGTTTGCATGACCGAGGAGCTGCACCGTCCCCTT
GCTGGCCGCTCTTTGGATTGAAGGGAGCTCTGCATCC
dot-bracket secondary structure
..((.(((((((((((.(((.(((((.((..(((((...(((.(((.(((...(((.((((.(((((....((((...(((((((((..((((((....)
))))).(((((....)))))((((((.((((........))))..)).)))))))))))))...))))....))))).)))).))).)))....))).))
).)))))..)).))))).))).))))))))))).)).
SIMILARITIES| miRBase ssp-MIR159a: 2e-133 PMRD sof-miR159a: 2e-133 microPC miR319: 2e-23 | UniProt no hits RFAM MIR159: 8e-69 | most similar mature miRNAs |
Identical with: ssp-MIR159a from miRBase (MNEST042468) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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