miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST002582
species:
Saccharum officinarum
miRNA family:
MIR2504
source:
miRNEST
Taxonomy by NCBI:
Saccharum officinarum
Saccharum officinarum complex
Saccharum
Andropogoneae
Panicoideae
PACCAD clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGACCAAGTTTATAGAAAAA
miRNA*
TTTCTAAAAACTTGGTCTTTA
mismatches:
3
bulges:
0
View larger
pre-miRNA
CACTACTGAAGTTACTTACTCCCTTTGTTCCAAATTATAGTTCACTTTGGCTTTATGCCAAGTCAAACATCTTTTAAGT
TCGACCAAGTTTATAGAAAAA
GCCACCAACATCCACAAGATCAAATTAGTTTTATTAAATTATCCATGGAATATGTTTTCATAAACTGTAGATGTTACTATATATTTTTT
TTTCTAAAAAC
TTGGTCTTTA
GGGAAATTTGACTTAGGACAAACCTAAAGGGAACTATATTTTGGAATGGAGAGAGAGTATATTGTAAGTTAT
dot-bracket secondary structure
........((.((((.(((((.((((((((((((.((((((((.((((((.(((...((((((((((..(((((.....
..((((((((((.((((((((
(.....((((((.(((.(((.((.(((((...))))).))))).((((((.....))))))....))).))))))...........)))
)))))).))))
))))))...)
))))..)))))))).))..))).)))))).)))))))).))))))))))))...)))))....)))).))..
SIMILARITIES
miRBase
bdi-MIR5169
:
0.00000002
PMRD
zma-miR437e
:
0.0000009
microPC
miR437
:
0.00000006
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record