miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST002582
species: Saccharum officinarum
miRNA family: MIR2504
source: miRNEST

Taxonomy by NCBI:
Saccharum officinarum Saccharum officinarum complex Saccharum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGACCAAGTTTATAGAAAAA

miRNA*
 TTTCTAAAAACTTGGTCTTTA

mismatches: 3
bulges: 0
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pre-miRNA
 CACTACTGAAGTTACTTACTCCCTTTGTTCCAAATTATAGTTCACTTTGGCTTTATGCCAAGTCAAACATCTTTTAAGTTCGACCAAGTTTATAGAAAAA
GCCACCAACATCCACAAGATCAAATTAGTTTTATTAAATTATCCATGGAATATGTTTTCATAAACTGTAGATGTTACTATATATTTTTTTTTCTAAAAAC
TTGGTCTTTAGGGAAATTTGACTTAGGACAAACCTAAAGGGAACTATATTTTGGAATGGAGAGAGAGTATATTGTAAGTTAT

dot-bracket secondary structure
........((.((((.(((((.((((((((((((.((((((((.((((((.(((...((((((((((..(((((.......((((((((((.((((((((
(.....((((((.(((.(((.((.(((((...))))).))))).((((((.....))))))....))).))))))...........))))))))).))))
))))))...)))))..)))))))).))..))).)))))).)))))))).))))))))))))...)))))....)))).))..


SIMILARITIES
miRBase bdi-MIR5169: 0.00000002

PMRD zma-miR437e: 0.0000009

microPC miR437: 0.00000006		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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