ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAATCTTGATGATGCTGCAT miRNA* GCAACATCATCAAGATTCAC mismatches: 1 bulges: 0 |
pre-miRNA
TATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAA
TATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTAT
dot-bracket secondary structure
)......((((((((((.((.((((((.((((((((((((((.((((....(((((((((...(((..(((((((((((((........))))))))))))
)..)))......)))))...))))....)))).)))))))))))))).)))))).)).))))).)))))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
TATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAA
TATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTAT
dot-bracket secondary structure
)......((((((((((.((.((((((.((((((((((((((.((((....(((((((((...(((..(((((((((((((........))))))))))))
)..)))......)))))...))))....)))).)))))))))))))).)))))).)).))))).)))))....
SIMILARITIES| miRBase tcc-MIR172c: 4.0E-8 PMRD ath-miRf10634-akr: 6.0E-7 microPC miR172: 3.0E-5 | UniProt no hits RFAM 2mir-172: 3.0E-6 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
