miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Solanum tuberosum



ABOUT THIS RECORD

ID: MNEST002635
species: Solanum lycopersicum
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GAATCTTGATGATGCTGCAT

miRNA*
GCAACATCATCAAGATTCAC

mismatches: 1
bulges: 0

View larger
pre-miRNA
ATCATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAA
TATAGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTCTAT


dot-bracket secondary structure
......((((((((((.((.((((((.((((((((((((((.((((....(((((((((...(((..(((((((((((((........))))))))))))
)..)))......)))))...))))....)))).)))))))))))))).)))))).)).))))).)))))....



SIMILARITIES
miRBase tcc-MIR172c: 0.00000004

PMRD ath-miRf10634-akr: 0.0000006

microPC miR172: 0.00003
UniProt no hits

RFAM mir-172: 0.000003
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence





Liczniki na strone;