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ABOUT THIS RECORD

ID: MNEST002636
species: Solanum lycopersicum
miRNA family: MIRf564
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAACATCATCAAGATTCACAA

miRNA*
 GGGAATCTTGATGATGCTGCA

mismatches: 2
bulges: 0
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pre-miRNA
 ATCAGTCAATGTTTGAGGATGCAACATCATCAAGATTCACAAAACTTGAAGGGAGAAGTATTTAATTATATATTTAGGGTGAATATTGGATATATAATAT
AGTTCAAAGTCTCTTATTTTCTCTCTTTGGGAATCTTGATGATGCTGCATCATCTAACATATGACTC

dot-bracket secondary structure
...((((((((((.((.((((((.((((((((((((((.((((....(((((((((...(((..(((((((((((((........)))))))))))))..
)))......)))))...))))....)))).)))))))))))))).)))))).)).))))).))))).


SIMILARITIES
miRBase tcc-MIR172c: 0.00000003

PMRD ath-miRf10634-akr: 0.0000005

microPC miR172: 0.00003		UniProt no hits

RFAM mir-172: 0.000002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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