ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR167
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGCTGCCAGCATGATCTA miRNA* GATCATGTGGTTGCTTCACC mismatches: 2 bulges: 1 |
pre-miRNA
ATAGCGTAGACTACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTACCTATAAATTTATATTAAGGCAAGATCAGATCATGTGGTTGCTTCACCTGTT
AGTTCGTACTACAA
dot-bracket secondary structure
.....((((((.((((.(((.((((((.((((.((((((((...(((.(((..............))).)))...)))))))))))).)))))).))).)
)))..)).))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
ATAGCGTAGACTACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTACCTATAAATTTATATTAAGGCAAGATCAGATCATGTGGTTGCTTCACCTGTT
AGTTCGTACTACAA
dot-bracket secondary structure
.....((((((.((((.(((.((((((.((((.((((((((...(((.(((..............))).)))...)))))))))))).)))))).))).)
)))..)).))))..
SIMILARITIES| miRBase vvi-MIR167e: 0.0000000000004 PMRD vvi-miR167e: 0.0000000000004 microPC miR167: 8e-36 | UniProt no hits RFAM MIR167_1: 0.000000000007 | most similar mature miRNAs |
Identical with: miR167 from microPC (MNEST045267) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
