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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002643
species: Solanum lycopersicum
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTA

miRNA*
 GATCATGTGGTTGCTTCACC

mismatches: 2
bulges: 1
View larger
pre-miRNA
 ATAGCGTAGACTACTATCAGTTGAAGCTGCCAGCATGATCTAAACTTACCTATAAATTTATATTAAGGCAAGATCAGATCATGTGGTTGCTTCACCTGTT
AGTTCGTACTACAA

dot-bracket secondary structure
.....((((((.((((.(((.((((((.((((.((((((((...(((.(((..............))).)))...)))))))))))).)))))).))).)
)))..)).))))..


SIMILARITIES
miRBase vvi-MIR167e: 0.0000000000004

PMRD vvi-miR167e: 0.0000000000004

microPC miR167: 8e-36		UniProt no hits

RFAM MIR167_1: 0.000000000007		most similar mature miRNAs

Identical with: miR167 from microPC (MNEST045267)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence




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