ABOUT THIS RECORDspecies: Solanum lycopersicum
miRNA family: MIR172
source: miRNEST
Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGAATCTTGATGATGCTGCAT miRNA* GTGGCATAATCAAGATTCACG mismatches: 2 bulges: 0 |
pre-miRNA
AATTTTTCTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATT
TGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTGCAATTA
dot-bracket secondary structure
)...........(((((((..((((..(((((((((.((((((((((.(((((...(((.((((((((((((.(((((.....))))))))))))...)))
)).)))))))).)))))))))).)))))))))..))))..)))))))..........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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deep sequencing data evidence
AATTTTTCTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATT
TGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTGCAATTA
dot-bracket secondary structure
)...........(((((((..((((..(((((((((.((((((((((.(((((...(((.((((((((((((.(((((.....))))))))))))...)))
)).)))))))).)))))))))).)))))))))..))))..)))))))..........
SIMILARITIES| miRBase sly-MIR172a: 2.0E-55 PMRD sly-miR172a: 2.0E-55 microPC miR172: 2.0E-55 | UniProt no hits RFAM 2mir-172: 6.0E-10 | most similar mature miRNAs |
Identical with: sly-MIR172a from miRBase (MNEST041542), miR172 from microPC , sly-miR172a from PMRD |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
download this record
deep sequencing data evidence
