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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST002644
species: Solanum lycopersicum
miRNA family: MIR172
source: miRNEST

Taxonomy by NCBI:
Solanum lycopersicum Lycopersicon Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGAATCTTGATGATGCTGCAT

miRNA*
 GTGGCATAATCAAGATTCACG

mismatches: 2
bulges: 0
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pre-miRNA
 ATTTTTCTTACAGTCGTTGTTTGCATATGTGGCATAATCAAGATTCACGTGAAAAGTTGCAAATTGGTTATATAATTGATGAAATTAATGGCTGGCTATT
TGAAACTCACGAGAATCTTGATGATGCTGCATCAGCAATAAACGACTATTGCAATTA

dot-bracket secondary structure
...........(((((((..((((..(((((((((.((((((((((.(((((...(((.((((((((((((.(((((.....))))))))))))...)))
)).)))))))).)))))))))).)))))))))..))))..)))))))..........


SIMILARITIES
miRBase sly-MIR172a: 2e-55

PMRD sly-miR172a: 2e-55

microPC miR172: 2e-55		UniProt no hits

RFAM mir-172: 0.0000000006		most similar mature miRNAs

Identical with: sly-MIR172a from miRBase (MNEST041542)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
degradome data
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deep sequencing data evidence




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