ABOUT THIS RECORDspecies: Tamarix hispida
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Tamarix hispida Tamarix Tamaricaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGATGACTTGCCTA miRNA* GGCAGTCTCCTTGGCTATC mismatches: 0 bulges: 2 |
pre-miRNA
GGTTTGAAGAGAAAACGCCATACATGAAGATGAAGAGTCAATAAATGTTTAGTAGCCAAGGATGACTTGCCTACTCTTCTTTTCATCGTGGTAGTGAATCA
CCATGTAGGGGTAGGTAGGCAGTCTCCTTGGCTATCTTAATAGGCTCTTCTTTCTCATGCTCGGCTTTTACCTCTTTGTTTTTG
dot-bracket secondary structure
)....((((((.(((.(((...(((((.((.((((((((......((((.((((((((((((.((((.(((((((..(((((.(((.(((((.....))))
).))).)))))..))))))))))))))))))))).)).)))))))))))).)).)))))...))).)))..)))))).......
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTTTGAAGAGAAAACGCCATACATGAAGATGAAGAGTCAATAAATGTTTAGTAGCCAAGGATGACTTGCCTACTCTTCTTTTCATCGTGGTAGTGAATCA
CCATGTAGGGGTAGGTAGGCAGTCTCCTTGGCTATCTTAATAGGCTCTTCTTTCTCATGCTCGGCTTTTACCTCTTTGTTTTTG
dot-bracket secondary structure
)....((((((.(((.(((...(((((.((.((((((((......((((.((((((((((((.((((.(((((((..(((((.(((.(((((.....))))
).))).)))))..))))))))))))))))))))).)).)))))))))))).)).)))))...))).)))..)))))).......
SIMILARITIES| miRBase bna-MIR169i: 6.0E-10 PMRD bna-miR169i: 6.0E-10 microPC miR169: 1.0E-41 | UniProt no hits RFAM 5MIR169_5: 2.0E-7 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST045589) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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