ABOUT THIS RECORDspecies: Taraxacum kok-saghyz
miRNA family: MIR171
source: miRNEST
Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAGCCGAACCAATATCACT miRNA* GTGGTATTGGTACGGTTCATCA mismatches: 2 bulges: 1 |
pre-miRNA
GAAGCTCCACAACGAAGTCCTGTGACAGAGAAATAGACACGGCGTGGTATTGGTACGGTTCATCAACTTTACTTCTTTGTATGTTTTGGAGTAGCCTTGA
CATGAGCCGAACCAATATCACTCTTGTATGTTTCTTTGAAGAAAACATGGCTTTCTTTACCG
dot-bracket secondary structure
.............((((((.(((..((((((((((.(((.((.(((((((((((.(((((((((((..(((((((............)))))))..))))
..))))))).))))))))))))).))).))))))))))......))).))))))........
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAAGCTCCACAACGAAGTCCTGTGACAGAGAAATAGACACGGCGTGGTATTGGTACGGTTCATCAACTTTACTTCTTTGTATGTTTTGGAGTAGCCTTGA
CATGAGCCGAACCAATATCACTCTTGTATGTTTCTTTGAAGAAAACATGGCTTTCTTTACCG
dot-bracket secondary structure
.............((((((.(((..((((((((((.(((.((.(((((((((((.(((((((((((..(((((((............)))))))..))))
..))))))).))))))))))))).))).))))))))))......))).))))))........
SIMILARITIES| miRBase vvi-MIR479: 0.00000003 PMRD vvi-miR479: 0.00000003 microPC miR171: 0.0001 | UniProt no hits RFAM MIR171_2: 0.00000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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