miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002694
species: Taraxacum kok-saghyz
miRNA family: MIR171
source: miRNEST

Taxonomy by NCBI:
Taraxacum kok-saghyz Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATGAGCCGAACCAATATCACT

miRNA*
GTGGTATTGGTACGGTTCATCA

mismatches: 2
bulges: 1

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pre-miRNA
GAAGCTCCACAACGAAGTCCTGTGACAGAGAAATAGACACGGCGTGGTATTGGTACGGTTCATCAACTTTACTTCTTTGTATGTTTTGGAGTAGCCTTGA
CATGAGCCGAACCAATATCACTCTTGTATGTTTCTTTGAAGAAAACATGGCTTTCTTTACCG


dot-bracket secondary structure
.............((((((.(((..((((((((((.(((.((.(((((((((((.(((((((((((..(((((((............)))))))..))))
..))))))).))))))))))))).))).))))))))))......))).))))))........



SIMILARITIES
miRBase vvi-MIR479: 0.00000003

PMRD vvi-miR479: 0.00000003

microPC miR171: 0.0001
UniProt no hits

RFAM MIR171_2: 0.00000001
most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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