ABOUT THIS RECORDspecies: Taraxacum officinale
miRNA family: MIR398
source: miRNEST
Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTGTTCTCAGGTCGCCCCTG miRNA* GGTGCGCCATGAGAACACATG mismatches: 1 bulges: 2 |
pre-miRNA
ACCCCAAAGAATAATGGCAGAGGTATCCGGCAGGTGCGCCATGAGAACACATGTGAAATGTACAATATATTAATTAGGTCATGTCATGTGTTCTCAGGTC
GCCCCTGCAAGATTTTCCTTTGTCCAAACGTTTGGT
dot-bracket secondary structure
...(((((......(((((((((.(((..(((((.(((((.((((((((((((....(((.((..............)))))..)))))))))))))).)
)).)))))..)))...)))))).)))....))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACCCCAAAGAATAATGGCAGAGGTATCCGGCAGGTGCGCCATGAGAACACATGTGAAATGTACAATATATTAATTAGGTCATGTCATGTGTTCTCAGGTC
GCCCCTGCAAGATTTTCCTTTGTCCAAACGTTTGGT
dot-bracket secondary structure
...(((((......(((((((((.(((..(((((.(((((.((((((((((((....(((.((..............)))))..)))))))))))))).)
)).)))))..)))...)))))).)))....))))).
SIMILARITIES| miRBase vvi-MIR398c: 0.0000004 PMRD vvi-miR398c: 0.0000004 microPC miR398: 4e-38 | UniProt no hits RFAM MIR398: 0.000008 | most similar mature miRNAs |
Identical with: miR398 from microPC (MNEST046034) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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