ABOUT THIS RECORDspecies: Thellungiella halophila
miRNA family: MIR838
source: miRNEST
Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTTTCTTCTTCTTCTTCCACC miRNA* TGGAAGAGTGGAAGATATTG mismatches: 2 bulges: 1 |
pre-miRNA
AGGTTGTGCTTGTTTCTTCTTCTTCTTCCACCATAACCCGACACAAAGCGGGTTTGGTTCTGCTTCTGGTTTGTGTCGGGTTATGGTGGAAGAGTGGAAG
ATATTGGTCTTCTG
dot-bracket secondary structure
(((....(((.((.((((((..(((((((((((((((((((((((((.((((...(((...))))))).))))))))))))))))))))))))).)))))
).)).)))..))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGGTTGTGCTTGTTTCTTCTTCTTCTTCCACCATAACCCGACACAAAGCGGGTTTGGTTCTGCTTCTGGTTTGTGTCGGGTTATGGTGGAAGAGTGGAAG
ATATTGGTCTTCTG
dot-bracket secondary structure
(((....(((.((.((((((..(((((((((((((((((((((((((.((((...(((...))))))).))))))))))))))))))))))))).)))))
).)).)))..))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
