ABOUT THIS RECORDspecies: Thellungiella halophila
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCACA miRNA* TGCTCACCTCTCTTTCTGTCAGT mismatches: 1 bulges: 2 |
pre-miRNA
AGAAATGCAAACAGAGAAAACTGACAGAAGAGAGTGAGCACATGCAGGCACTGTTATGTGTCCATTACTTTGCGTGTGCGTGCTCACCTCTCTTTCTGTC
AGTTGCCTGCCTCTCTCTTTC
dot-bracket secondary structure
........(((.(((((.(((((((((((((((((((((((.((((.(((..((.(((....))).))..))).)))).))))))).))))).)))))))
)))).......))))).))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGAAATGCAAACAGAGAAAACTGACAGAAGAGAGTGAGCACATGCAGGCACTGTTATGTGTCCATTACTTTGCGTGTGCGTGCTCACCTCTCTTTCTGTC
AGTTGCCTGCCTCTCTCTTTC
dot-bracket secondary structure
........(((.(((((.(((((((((((((((((((((((.((((.(((..((.(((....))).))..))).)))).))))))).))))).)))))))
)))).......))))).))).
SIMILARITIES| miRBase ath-MIR156b: 2e-46 PMRD ath-miRf11143-akr: 2e-46 microPC miR156: 0.000002 | UniProt no hits RFAM mir-156: 4e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
