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ABOUT THIS RECORD

ID: MNEST002711
species: Thellungiella halophila
miRNA family: MIR414
source: miRNEST

Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CCATCATCATCATCATCATCA

miRNA*
 ATGTTGCTGAGGATAGTAGGTA

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CACCATCAACACCATCATCATCATCATCATCATCATCATCATCATATTATATTCTTCCATTTGCCAGTTTAACAAAAAAAATGTTGACTCTTCCCAAAAA
TATGTTACAATTACAATCCTAATGATACAATACTAACCCATGAGAAACAAATTGGAGTACACAAAAGAAGGAAAAAAAGAGACAGATATAGAATTGATTG
AAGAAAGAAGGAAAAAAAAAAAAAATCTTGTTTGAAGGGTAACAAGATACTCCACTAAATTTTTAAATGGCAATGCAACAAGATAACTAATTAATGAGGA
TGATGATGTTGCTGAGGATAGTAGGTAATGAAATT

dot-bracket secondary structure
.....(((..(((((.(((.(((.((.((((((((((.((((...((((...((((....((((((..((((((.......)))))).(((((.(((...
((((((..........((((..........((((..((.((.........)).)))))).........))))............))))))...)))...)
)))).(((((..............((((((((........))))))))...........)))))...))))))......))))....))))..)))).))
)))))))).)).))).))).)).)))..)))....


SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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