ABOUT THIS RECORDspecies: Thellungiella halophila
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Thellungiella halophila Thellungiella Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCATCATCATCATATTAT miRNA* AATTAATGAGGATGATGATG mismatches: 4 bulges: 1 |
pre-miRNA
ATCACCATCAACACCATCATCATCATCATCATCATCATCATCATCATATTATATTCTTCCATTTGCCAGTTTAACAAAAAAAATGTTGACTCTTCCCAAA
AATATGTTACAATTACAATCCTAATGATACAATACTAACCCATGAGAAACAAATTGGAGTACACAAAAGAAGGAAAAAAAGAGACAGATATAGAATTGAT
TGAAGAAAGAAGGAAAAAAAAAAAAAATCTTGTTTGAAGGGTAACAAGATACTCCACTAAATTTTTAAATGGCAATGCAACAAGATAACTAATTAATGAG
GATGATGATGTTGCTGAGGATAGTAGGTAATGAAATTT
dot-bracket secondary structure
.......(((..(((((.(((.(((.((.((((((((((.((((...((((...((((....((((((..((((((.......)))))).(((((.(((.
..((((((..........((((..........((((..((.((.........)).)))))).........))))............))))))...)))..
.))))).(((((..............((((((((........))))))))...........)))))...))))))......))))....))))..)))).
)))))))))).)).))).))).)).)))..))).....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCACCATCAACACCATCATCATCATCATCATCATCATCATCATCATATTATATTCTTCCATTTGCCAGTTTAACAAAAAAAATGTTGACTCTTCCCAAA
AATATGTTACAATTACAATCCTAATGATACAATACTAACCCATGAGAAACAAATTGGAGTACACAAAAGAAGGAAAAAAAGAGACAGATATAGAATTGAT
TGAAGAAAGAAGGAAAAAAAAAAAAAATCTTGTTTGAAGGGTAACAAGATACTCCACTAAATTTTTAAATGGCAATGCAACAAGATAACTAATTAATGAG
GATGATGATGTTGCTGAGGATAGTAGGTAATGAAATTT
dot-bracket secondary structure
.......(((..(((((.(((.(((.((.((((((((((.((((...((((...((((....((((((..((((((.......)))))).(((((.(((.
..((((((..........((((..........((((..((.((.........)).)))))).........))))............))))))...)))..
.))))).(((((..............((((((((........))))))))...........)))))...))))))......))))....))))..)))).
)))))))))).)).))).))).)).)))..))).....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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