ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIRf519
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTATAGCATCATGAGCAATCA miRNA* ACCGCTCATGATGTTATATCG mismatches: 2 bulges: 0 |
pre-miRNA
ACAAAAAAGATTGTATAGCATCATGAGCAATCAGCCTTAAACTTTTTAGCAAAATGACCGCTCATGATGTTATATCGTTTCATGA
dot-bracket secondary structure
).......(((.((((((((((((((((..(((...(((((...))))).....)))..)))))))))))))))).)))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
ACAAAAAAGATTGTATAGCATCATGAGCAATCAGCCTTAAACTTTTTAGCAAAATGACCGCTCATGATGTTATATCGTTTCATGA
dot-bracket secondary structure
).......(((.((((((((((((((((..(((...(((((...))))).....)))..)))))))))))))))).)))......
SIMILARITIES| miRBase no hits PMRD ath-miRf11142-akr: 4.0E-9 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
