ABOUT THIS RECORDspecies: Theobroma cacao
miRNA family: MIRf325
source: miRNEST
Taxonomy by NCBI:
Theobroma cacao Theobroma Byttnerioideae Malvaceae Malvales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACCATTTTCGTTGCTCTCTT miRNA* GAAGCACTGGTATTGGCGT mismatches: 4 bulges: 2 |
pre-miRNA
ATCGCCTTGATGACCATTTTCGTTGCTCTCTTCCTCCCCGAAACAAAAGGAATTCCTCTCGACTCCATGAATTTAGTTTGGGAGAAGCACTGGTATTGGC
GTCGGTTTGT
dot-bracket secondary structure
...(((..((((.(((...(((.((((.((((((..............(((.((......)).))).............)))))))))).)))...))))
))))))....
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ATCGCCTTGATGACCATTTTCGTTGCTCTCTTCCTCCCCGAAACAAAAGGAATTCCTCTCGACTCCATGAATTTAGTTTGGGAGAAGCACTGGTATTGGC
GTCGGTTTGT
dot-bracket secondary structure
...(((..((((.(((...(((.((((.((((((..............(((.((......)).))).............)))))))))).)))...))))
))))))....
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|Q93Y91|STP5_ARATH: 0.00000000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
